| Name | Location |
| Abundant Life Penecostal | 365 Hwy 49 West |
| Alpha & Omega Church of God In Christ, | 2668 Irwinton Road |
| Baldwin Church of Christ2668 Irwinton Road, Milledgeville, GA 31051 | 57 Marshall Rd |
| Bible Revival Church | 101 Deerwood Dr. |
| Bread from Heaven | 130 E. Screven |
| Central Church of Christ | 359 Sparta Hwy |
| Christ Temple of Refuge | 901 N. Clark |
| Church Central | 620 S. Wilkinson |
| Church of God Prophecy | |
| Church of Jesus Christ of Latter Day Saints | 1700 N. Jefferson St. |
| Church on the Move | 227 Old Stage Dr |
| Community Church of God | 132 Log Cabin Rd. |
| Discipleship Christian Center | 1835 Vinson Hwy |
| Exalted Word Ministry | 2743-A Irwinton Rd |
| Faith Point Church of the Nazarene | 700 Dunlap Rd |
| Freedom Church Inc. | 500 Underwood Rd. |
| The Father's Heart International Church | 116 Frank Bone Rd. |
| First Christian Church | 555 N. Columbia St. |
| First Seventh Day Adventist | 515 N. Liberty St |
| Freewill Fellowship Worship Center | 115 Cook St. |
| Hardwick Christian Church | 113 Thomas St. |
| Hope Lutheran Church | 214 Hwy 49W |
| Kingdom Hall of Jehovah's Witnesses | 2701 Irwinton Rd. |
| Life & Peace Christian Center | 630 N. Wayne St. |
| Living Word of God Church | 151 W. Charlton |
| Milledgeville Church of God | 120 Earnest Byner St. |
| The Miracle Healing Temple | 133 Central Ave. |
| Missionary Christian Center - The Sheep Shed | 120 Ivey Dr. |
| New Beginning Church of Christ | corner Wilkinson & Habersham |
| New Beginning Worship Center | 1745 Irwinton Rd |
| New Covenant Commuity Outreach Ministries | 321 E. Hancock St. |
| New Covenant Fellowship Christian Church | 2668 Irwinton Rd. |
| New Life
Church ( Milledgeville Foursquare Church)
Founded 1956. |
112 Jacqueline Terrace |
| New Life Fellowship Church | 123 Ennis Rd |
| New Vision Church of God in Christ | 941 Dunlap Rd |
| Oak Bethel Open Door Pentecostal Church | 866 Stembridge Rd Cemetery |
| Oasis Praise & Worship Center | 2955 N. Columbia |
| The Place of Worship | 646 Gordon Hwy. |
| The Power of Love Christian Fellowship Church Inc. | 220 E. Green St. |
| Seventh-Day Adventist | 509 N. Liberty St. |
| Seventh-Day Adventist Church of Milledgeville | 156 Pettigrew Rd. |
| Tabernacle of Praise | 304 Hwy 49 W |
| Universal Faith & Tabernacle of Redemption Mininstries Inc. | 931 N. Jefferson |
| Zion Church of God in Christ.
Established 1941 originally called Zion Penecostal Church of God In Christ, name changed in 1947 |
271 E. Camden St. |
